Revision as of 22:40, 23 September 2018

ISSS608 Visual Analytics and Applications

Readings

mosaicplot function of R Graphics
- Ternary, which employs the native plot functions;
- Plotly, which uses a bespoke suite of plotting functions;
- vcd, which contains the function ternaryplot;
- ggtern, an extension to ggplot2.

@@ Line 65: / Line 65: @@
-==Heatmap==
+==Mosaic plot==
-* [https://warwick.ac.uk/fac/sci/moac/people/students/peter_cock/r/heatmap Using R to draw a Heatmap from Microarray Data]
+* [https://cran.r-project.org/web/packages/ggmosaic/vignettes/ggmosaic.html Mosaic plots with ggplot2]
-* R packages for creating heatmap
-** heatmap() [R base function, stats package]: Draws a simple heatmap.
-** heatmap.2() [gplots R package]: Draws an enhanced heatmap compared to the R base function.
-** pheatmap() [pheatmap R package]: Draws pretty heatmaps and provides more control to change the appearance of heatmaps.
-** Heatmap() [[https://bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html ComplexHeatmap] R/Bioconductor package]: Draws, annotates and arranges complex heatmaps (very useful for genomic data analysis)
-** [https://cran.r-project.org/web/packages/superheat/ Superheatmap]
-** d3heatmap() [d3heatmap R package]: Draws an interactive/clickable heatmap