Difference between revisions of "Lesson04"
Jump to navigation
Jump to search
| (8 intermediate revisions by the same user not shown) | |||
| Line 39: | Line 39: | ||
* [https://search-proquest-com.libproxy.smu.edu.sg/docview/228501277?rfr_id=info%3Axri%2Fsid%3Aprimo Corrgrams: Exploratory Displays for Correlation Matrices] | * [https://search-proquest-com.libproxy.smu.edu.sg/docview/228501277?rfr_id=info%3Axri%2Fsid%3Aprimo Corrgrams: Exploratory Displays for Correlation Matrices] | ||
* [https://ieeexplore-ieee-org.libproxy.smu.edu.sg/document/6634192/ GPLOM: The Generalized Plot Matrix for Visualizing Multidimensional Multivariate Data] | * [https://ieeexplore-ieee-org.libproxy.smu.edu.sg/document/6634192/ GPLOM: The Generalized Plot Matrix for Visualizing Multidimensional Multivariate Data] | ||
| − | * [https://link-springer-com.libproxy.smu.edu.sg/content/pdf/10.1007%2F978-3-540-33037-0_8.pdf Multivariate Data Glyphs | + | * [https://en.wikipedia.org/wiki/Ternary_plot Ternary Plot] |
| − | + | * [https://link-springer-com.libproxy.smu.edu.sg/content/pdf/10.1007%2F978-3-540-33037-0_8.pdf Multivariate Data Glyphs] | |
| − | * [ | + | * [https://link-springer-com.libproxy.smu.edu.sg/content/pdf/10.1007%2F978-3-540-33037-0_25.pdf Parallel Coordinates] |
| + | |||
* [http://en.wikipedia.org/wiki/Heat_map Wikipedia: Heatmap] | * [http://en.wikipedia.org/wiki/Heat_map Wikipedia: Heatmap] | ||
* [https://onlinelibrary-wiley-com.libproxy.smu.edu.sg/doi/full/10.1002/wics.1192 Mosaic Plots] | * [https://onlinelibrary-wiley-com.libproxy.smu.edu.sg/doi/full/10.1002/wics.1192 Mosaic Plots] | ||
| Line 50: | Line 51: | ||
==Optional Readings== | ==Optional Readings== | ||
| + | * [http://www.ifs.tuwien.ac.at/~silvia/wien/vu-infovis/articles/Inselberg-InfoVis97.pdf Multidimensional Detective] | ||
* [http://eagereyes.org/techniques/parallel-coordinates Parallel Coordinates] | * [http://eagereyes.org/techniques/parallel-coordinates Parallel Coordinates] | ||
* [http://www.perceptualedge.com/articles/b-eye/parallel_coordinates.pdf Multivariate Analysis Using Parallel Coordinates] | * [http://www.perceptualedge.com/articles/b-eye/parallel_coordinates.pdf Multivariate Analysis Using Parallel Coordinates] | ||
| Line 56: | Line 58: | ||
* [http://www.theusrus.de/blog/parallel-sets-vs-mosaic-plots-take-i/ Parallel Sets vs. Mosaic Plots (Take I)] | * [http://www.theusrus.de/blog/parallel-sets-vs-mosaic-plots-take-i/ Parallel Sets vs. Mosaic Plots (Take I)] | ||
* [http://www.discoveryexhibition.org/pmwiki.php/Entries/Kosara2009 Discovery Exhibition: Parallel Sets] | * [http://www.discoveryexhibition.org/pmwiki.php/Entries/Kosara2009 Discovery Exhibition: Parallel Sets] | ||
| + | |||
| + | |||
| + | =R Methods= | ||
| + | |||
| + | ==Ternary Plot== | ||
| + | |||
| + | * R packages for creating ternary plot | ||
| + | ** [https://cran.r-project.org/web/packages/Ternary/index.html Ternary], which employs the native plot functions; | ||
| + | ** [https://plot.ly/r/ternary-plots/ Plotly], which uses a bespoke suite of plotting functions; | ||
| + | ** [https://cran.r-project.org/web/packages/vcd/index.html vcd], which contains the function ternaryplot; | ||
| + | ** [http://www.ggtern.com/ ggtern], an extension to ggplot2. | ||
| + | |||
| + | |||
| + | ==Heatmap== | ||
| + | |||
| + | * [https://warwick.ac.uk/fac/sci/moac/people/students/peter_cock/r/heatmap Using R to draw a Heatmap from Microarray Data] | ||
| + | * R packages for creating heatmap | ||
| + | ** heatmap() [R base function, stats package]: Draws a simple heatmap. | ||
| + | ** heatmap.2() [gplots R package]: Draws an enhanced heatmap compared to the R base function. | ||
| + | ** pheatmap() [pheatmap R package]: Draws pretty heatmaps and provides more control to change the appearance of heatmaps. | ||
| + | ** Heatmap() [[https://bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html ComplexHeatmap] R/Bioconductor package]: Draws, annotates and arranges complex heatmaps (very useful for genomic data analysis) | ||
| + | ** [https://cran.r-project.org/web/packages/superheat/ Superheatmap] | ||
| + | ** d3heatmap() [d3heatmap R package]: Draws an interactive/clickable heatmap | ||
Latest revision as of 08:17, 22 September 2018
ISSS608 Visual Analytics and Applications
|
|
|
|
|
|
Contents
Readings
Core Readings
- An Introduction to Visual Multivariate Analysis
- The scatter-plot matrix: a great tool
- A Graphical Display of Large Correlation Matrices
- Corrgrams: Exploratory Displays for Correlation Matrices
- GPLOM: The Generalized Plot Matrix for Visualizing Multidimensional Multivariate Data
- Ternary Plot
- Multivariate Data Glyphs
- Parallel Coordinates
- Wikipedia: Heatmap
- Mosaic Plots
- Turning a Table into a Tree: Growing Parallel Sets into a Purposeful Project
- TableLens: A Clear Window for Viewing Multivariate Data
Optional Readings
- Multidimensional Detective
- Parallel Coordinates
- Multivariate Analysis Using Parallel Coordinates
- Understanding Area Based Plots: Mosaic Plots
- Visualizing Defect Percentages with Parallel Sets
- Parallel Sets vs. Mosaic Plots (Take I)
- Discovery Exhibition: Parallel Sets
R Methods
Ternary Plot
- R packages for creating ternary plot
Heatmap
- Using R to draw a Heatmap from Microarray Data
- R packages for creating heatmap
- heatmap() [R base function, stats package]: Draws a simple heatmap.
- heatmap.2() [gplots R package]: Draws an enhanced heatmap compared to the R base function.
- pheatmap() [pheatmap R package]: Draws pretty heatmaps and provides more control to change the appearance of heatmaps.
- Heatmap() [ComplexHeatmap R/Bioconductor package]: Draws, annotates and arranges complex heatmaps (very useful for genomic data analysis)
- Superheatmap
- d3heatmap() [d3heatmap R package]: Draws an interactive/clickable heatmap
